smi_sec_5_4_compute_mcmc: Compute MCMC in HPV model

In christianu7/aistats2020smi: Semi-Modular Inference

Description

Compute MCMC used in section 5.3

Usage

smi_sec_5_4_compute_mcmc(
  out_dir,
  eta_all = seq(0.1, 1, by = 0.1),
  force_compute_mcmc = FALSE,
  n_iter = 5000,
  n_iter_sub = 500,
  n_warmup = 1000,
  n_cores = 8,
  seed = 123,
  pkg_dir = system.file(package = "aistats2020smi")
)

Arguments

out_dir	Directory where outputs are stored
eta_all	Levels of influence of the Poisson module
force_compute_mcmc	To avoid computation time, completed MCMC is not recomputed, unless force_compute_mcmc is True
n_iter	Number of iterations in the main chain
n_iter_sub	Number of iterations in the sub-chain for the two-stage MCMC
n_warmup	Number of iterations used for warm-up
n_cores	Number of cores used by stan
seed	Set random seed before MCMC starts for reproducibility
pkg_dir	Internal directory where the package is installed. Used to retrieve stan scripts for the HPV model.

christianu7/aistats2020smi documentation built on March 7, 2021, 2:40 p.m.