API for christpa/DMRScan
Detection of Differentially Methylated Regions

Global functions
DMRScan.methylationData Man page
DMRScan.phenotypes Man page
Region Man page Source code
Region-class Man page
RegionList Man page Source code
RegionList-class Man page
Rt Man page
Rt,Region-method Man page
Rt,RegionList-method Man page
St Man page
[ Man page
[,RegionList,ANY,ANY,ANY-method Man page
[[ Man page
[[,RegionList-method Man page
a_j Source code
as.GRanges Man page
as.GRanges,Region-method Man page
as.GRanges,RegionList-method Man page
dmrscan Man page Source code
estimateThreshold Man page
estimateThresholdGrid.mcmc Source code
estimateThresholdGrid.sampling Source code
estimateThresholdGrid.siegmund Source code
estimateWindowThreshold Man page Source code
gamma Source code
getRegions Man page Man page
getRegions,RegionList-method Man page
head,RegionList-method Man page
importantSampling Source code
length,Region-method Man page
length,RegionList-method Man page
makeCpGgenes Man page Source code
makeCpGregions Man page Source code
makeData.ar Source code
makeData.arima Source code
manyWindowSizeScanner Man page
manyWindowSizeScanner,Region-method Man page
manyWindowSizeScanner,RegionList-method Man page
meanAR Source code
nCpG Man page
nCpG,Region-method Man page
nCpG,RegionList-method Man page
na.omitt.dmrscan Source code
names,Region-method Man page
names,RegionList-method Man page
ndiag Source code
oneWindowSizeScanner Man page
oneWindowSizeScanner,Region-method Man page
oneWindowSizeScanner,RegionList-method Man page
pVal Man page
pVal,Region-method Man page
pVal,RegionList-method Man page
pos Man page
pos,Region-method Man page
pos,RegionList-method Man page
print,Region-method Man page
print,RegionList-method Man page
range,Region-method Man page
setRegion Man page
setRegion,RegionList-method Man page
show,Region-method Man page
siegmundLambda Source code
sort,RegionList-method Man page
tVal Man page
tVal,Region-method Man page
tVal,RegionList-method Man page
varAR Source code
windowTest Source code
christpa/DMRScan documentation built on Dec. 22, 2017, 1:27 p.m.