create_loom: Create a basic loom file from a tsv file that contains UMI...

In churchill-lab/scRATE: A Bayesian model selection approach to test zero inflation from scRNA-seq data

Description

Create a basic loom file from a tsv file that contains UMI count matrix

Usage

create_loom(efile, outfile, min_expressed_cells = 0)

Arguments

efile	A tsv file that containes UMI count matrix (gene x cell)
outfile	Name of loom file to encode single-cell gene expression
min_expressed_cells	The number of non-zero count cells for a gene to be marked 'Selected' for scRATE analysis

Value

Nothing

churchill-lab/scRATE documentation built on Aug. 12, 2020, 2:52 p.m.