get_model_fit: Fit regression models for many genes and save the fitting...
In churchill-lab/scRATE: A Bayesian model selection approach to test zero inflation from scRNA-seq data
Description
Usage
Arguments
Value
View source: R/get_model_fit.R
Description
Fit regression models for many genes and save the fitting objects
Usage
1
2
Arguments
cntfile
Expression quantity file (RData format: Use 'save' and 'load')
formula_string
A regression formula to fit the non-zero-inflated counts
model2fit
A specific model to fit (1:P, 2:NB, 3:ZIP, 4:ZINB, NULL:All)
nCores
Number of cores
seed
Seed number
outfile
Output file name to store ELPD_loo results (RDS format)
Value
A list of model fits (only available when outfile is not specified)
churchill-lab/scRATE documentation built on Aug. 12, 2020, 2:52 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
View source: R/get_model_fit.R
Description
Fit regression models for many genes and save the fitting objects
Usage
1 2 |
Arguments
cntfile |
Expression quantity file (RData format: Use 'save' and 'load') |
formula_string |
A regression formula to fit the non-zero-inflated counts |
model2fit |
A specific model to fit (1:P, 2:NB, 3:ZIP, 4:ZINB, NULL:All) |
nCores |
Number of cores |
seed |
Seed number |
outfile |
Output file name to store ELPD_loo results (RDS format) |
Value
A list of model fits (only available when outfile is not specified)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.