edgeLengthTable: edgeLengthTable

In chutter/AstralPlane: R Package For Preparing, Running, Analyzing and Plotting for the Species Tree Program ASTRAL-III

edgeLengthTable

Description

This function creates an edge length table showing the two connecting nodes to the edge

Usage

edgeLengthTable(tree = NULL, tips = FALSE)

Arguments

tree	phylogenetic tree from ape read.tree in phylo format
tips	whether to include the tip edges or not

Value

a data.frame is returned with the columns: "edge" = edge number; "node1" = ancestral node; and "node2" = descendent node. Node that node1 can be repeated because many descendents could have 1 ancestor.

Examples

your.tree = ape::read.tree(file = "file-path-to-tree.tre")
edge.table = edgeLengthTable(tree = your.tree, tips = TRUE)

chutter/AstralPlane documentation built on Aug. 29, 2024, 5:21 p.m.