readConcordance: readConcordance

In chutter/AstralPlane: R Package For Preparing, Running, Analyzing and Plotting for the Species Tree Program ASTRAL-III

readConcordance

Description

Function for reading concordance factor data into a simple table

Usage

readConcordance(file.name = NULL)

Arguments

file.name

file name of the .cf.stat file excluding ".cf.stat"

Value

a data.frame with the concordance factor data

Examples

your.tree = ape::read.tree(file = "file-path-to-tree.tre")
astral.data = astralPlane(astral.tree = your.tree,
                          outgroups = c("species_one", "species_two"),
                          tip.length = 1)

chutter/AstralPlane documentation built on Aug. 29, 2024, 5:21 p.m.