makePolytomy: makePolytomy
In chutter/AstralPlane: R Package For Preparing, Running, Analyzing and Plotting for the Species Tree Program ASTRAL-III
makePolytomy R Documentation
makePolytomy
Description
This function collapses nodes under a certain support value into a polytomy
Usage
makePolytomy(tree = NULL, polytomy.limit = NULL)
Arguments
tree
phylogenetic tree from ape read.tree in phylo format
polytomy.limit
the threshold for collapsing a node into a polytomy
Value
phylogenetic tree in phylo format, with the nodes collapsed into polytomies.
Examples
your.tree = ape::read.tree(file = "file-path-to-tree.tre")
new.tree = makePolytomy(tree = your.tree, polytomy.limit = 10)
chutter/AstralPlane documentation built on Aug. 29, 2024, 5:21 p.m.
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| makePolytomy | R Documentation |
makePolytomy
Description
This function collapses nodes under a certain support value into a polytomy
Usage
makePolytomy(tree = NULL, polytomy.limit = NULL)
Arguments
tree |
phylogenetic tree from ape read.tree in phylo format |
polytomy.limit |
the threshold for collapsing a node into a polytomy |
Value
phylogenetic tree in phylo format, with the nodes collapsed into polytomies.
Examples
your.tree = ape::read.tree(file = "file-path-to-tree.tre")
new.tree = makePolytomy(tree = your.tree, polytomy.limit = 10)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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