Files in ciccalab/sysSVM
sysSVM
DESCRIPTION
NAMESPACE
R/dependencies.R
R/functions.R
R/sysdata.rda
R/syssvm.R
README.md
example_data/518_CGC_annotation_2211.xlsx
example_data/CGCs_to_be_considered_OAC.tsv
example_data/NCG_false_positives.txt
example_data/cancerGenesNCG5_2.Rdata
example_data/expressionNCG5_gtex.Rdata
example_data/geneInfoNCG5_2.Rdata
example_data/geneProperties_final_mmImputed.Rdata
example_data/oac_129_66_71_total_table_19014.tsv
example_data/oac_ML_input.tsv
example_data/oac_ML_input_formatted.tsv
man/syssvm.Rd
raw_scripts/OAC.R
raw_scripts/OAC_cnvs.R
raw_scripts/OAC_rna.R
raw_scripts/README.md
raw_scripts/WES_pipeline_KCL.sh
raw_scripts/clinical_comparison.R
raw_scripts/cloneR_input.R
raw_scripts/config.R
raw_scripts/data_parsing.R
raw_scripts/data_parsing.sh
raw_scripts/functions.R
raw_scripts/getRawCN.R
raw_scripts/import_to_mysql.R
raw_scripts/impute.R
raw_scripts/impute.sh
raw_scripts/isomap_Rosalind.R
raw_scripts/isomap_Rosalind.sh
raw_scripts/modelTrainingCV_NoveltyDetection.R
raw_scripts/parse_dir_str.R
raw_scripts/power_analysis.R
raw_scripts/predict_new_samples.R
raw_scripts/predict_new_samples.sh
raw_scripts/prediction_validation_set_21_literature.R
raw_scripts/prediction_validation_set_TCGA.R
raw_scripts/prepare.R
raw_scripts/prepare.sh
raw_scripts/prepare_CHAT.R
raw_scripts/randomise_GSEA.R
raw_scripts/rnaseq.R
raw_scripts/runOncodriveClust.R
raw_scripts/score_genes.R
raw_scripts/score_genes.sh
raw_scripts/signed_ks.R
raw_scripts/submitNoveltyDetection.sh
raw_scripts/submitRandomiseGSEA.sh
raw_scripts/summary_plotting.R
raw_scripts/total_table.R
sysSVM.Rproj
