data_genome: Example for genome wide analysis of three traits
In clagiamba/moloc: Multiple Traits Co-localization
Description
A list of data frames containing summary statistics from three indendent datasets,
for example GWAS, expression QTL, methylation QTL
Usage
1
Format
A list of three data frames with summary statistics for each data:
the biomarker data frame with 746 rows and 11 columns;
the eqtl data frame with 397 rows and 11 columns;
the methylation data frame with 12951 and 10 columns.
- SNP
SNP names, common to all data frames
- BETA
Effect size estimate from regression, if OR must give the logOR
- SE
Standard Error
- z
Z-score
- PVAL
P-value
- N
Sample size
- MAF
Minor allele frequency
...
clagiamba/moloc documentation built on Jan. 25, 2021, 2:43 a.m.
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Description
A list of data frames containing summary statistics from three indendent datasets, for example GWAS, expression QTL, methylation QTL
Usage
1 |
Format
A list of three data frames with summary statistics for each data: the biomarker data frame with 746 rows and 11 columns; the eqtl data frame with 397 rows and 11 columns; the methylation data frame with 12951 and 10 columns.
- SNP
SNP names, common to all data frames
- BETA
Effect size estimate from regression, if OR must give the logOR
- SE
Standard Error
- z
Z-score
- PVAL
P-value
- N
Sample size
- MAF
Minor allele frequency
...
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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