match_alleles: match_alleles

In clagiamba/moloc: Multiple Traits Co-localization

Description

Match alleles to a reference and flip betas

Match alleles to a reference and flip betas

Usage

match_alleles(data, A1.ref = "A1.ref", A2.ref = "A2.ref", A1.data = "A1",
  A2.data = "A2", BETA.data = "BETA", flip = TRUE)

match_alleles(data, A1.ref = "A1.ref", A2.ref = "A2.ref", A1.data = "A1",
  A2.data = "A2", BETA.data = "BETA", flip = TRUE)

Arguments

data,	is a data.frame with columns A1 and A2, and reference alleles that need to match
A1.ref	column names of ref alleles for A1 in the same data frame
A2.ref	column names of ref alleles for A2 in the same data frame
flip	logical, whether to flip the betas if the alleles are flipped
data,	is a data.frame with columns A1 and A2, and reference alleles that need to match
A1.ref	column names of ref alleles for A1 in the same data frame
A2.ref	column names of ref alleles for A2 in the same data frame
flip	logical, whether to flip the betas if the alleles are flipped

Value

data frame

data frame

Author(s)

Claudia Giambartolomei, James Boocock

Claudia Giambartolomei, James Boocock

See Also

Other align.functions: change_indels, complement_snp

Other align.functions: change_indels, complement_snp

clagiamba/moloc documentation built on Jan. 25, 2021, 2:43 a.m.