loadParams: Load Processing Parameters from File

In claraqin/neonMicrobe: Downloading, Pre-processing, and Assembling NEON Soil Microbe Marker Gene Sequence Data

Load Processing Parameters from File

Description

Loads neonMicrobe processing parameters from a specified file to a specified environment, usually associated with a processing batch.

Usage

loadParams(params_file, env = NULL, verbose = TRUE)

Arguments

params_file	Filepath to R script containing name-value assignments (e.g. x = 1) that will be used to create an environment.
env	Environment in which to load the parameters. By default (NULL), searches for current processing batch environment. If found, loads parameters there.
verbose	Default TRUE. Whether to print warning message if a parameter has already been assigned in a processing batch.

Examples

## Not run: 
e <- new.env()
ls(e)  # character(0)
loadParams("./R/test_params.R", env=e)
ls(e)  # "x" "y"
get("x", e)  # "hello there"
get("y", e)  # "goodbye now"
loadParams("./R/test_params.R", env=e) # warning

## End(Not run)

claraqin/neonMicrobe documentation built on April 11, 2024, 11:47 a.m.