seqtab_greatplains_16s: 16S Sequence Abundance Table for NEON Great Plains Sites
In claraqin/neonMicrobe: Downloading, Pre-processing, and Assembling NEON Soil Microbe Marker Gene Sequence Data
seqtab_greatplains_16s R Documentation
16S Sequence Abundance Table for NEON Great Plains Sites
Description
A sequence abundance table generated from a
subset of the NEON 16S sequence metadata for three
terrestrial NEON sites in the Great Plains (KONZ,
CPER, and NOGP) collected during July 2017. This
sequence table has been collapsed using
collapseNoMismatch.
Usage
seqtab_greatplains_16s
Format
A numeric matrix with 86 rows (samples) and
46,730 columns (ASVs). Values represent read abundances.
The table has been collapsed (100% clustering) using
collapseNoMismatch. Read abundances
are not standardized.
Details
This sequence abundance table was processed using maxEE=8
and truncLen=220 for forward and reverse reads. See the
full code used to generate this in the vignette
"Analyze NEON Great Plains 16S".
Source
See vignette "Analyze NEON Great Plains 16S".
claraqin/neonMicrobe documentation built on April 11, 2024, 11:47 a.m.
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| seqtab_greatplains_16s | R Documentation |
16S Sequence Abundance Table for NEON Great Plains Sites
Description
A sequence abundance table generated from a
subset of the NEON 16S sequence metadata for three
terrestrial NEON sites in the Great Plains (KONZ,
CPER, and NOGP) collected during July 2017. This
sequence table has been collapsed using
collapseNoMismatch.
Usage
seqtab_greatplains_16s
Format
A numeric matrix with 86 rows (samples) and
46,730 columns (ASVs). Values represent read abundances.
The table has been collapsed (100% clustering) using
collapseNoMismatch. Read abundances
are not standardized.
Details
This sequence abundance table was processed using maxEE=8 and truncLen=220 for forward and reverse reads. See the full code used to generate this in the vignette "Analyze NEON Great Plains 16S".
Source
See vignette "Analyze NEON Great Plains 16S".
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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