Man pages for claudiacava/StarBioTrek
StarBioTrek
| average | For TCGA data get human pathway data and creates a matrix... |
| Data_CANCER_normUQ_filt | TCGA data |
| ds_score_crtlk | For TCGA data get human pathway data and creates a measure of... |
| euc_dist_crtlk | For TCGA data get human pathway data and creates a measure of... |
| GE_matrix | Get human KEGG pathway data and a gene expression matrix in... |
| getKEGGdata | Get human KEGG pathway data. |
| getNETdata | Get network data. |
| IPPI | Multilayer analysis Cava et al. BMC Genomics 2017 |
| list_path_net | Get human KEGG pathway data and output of path_net in order... |
| list_path_plot | A matrix of gene expression for pathways given by the user. |
| matrix_plot | Get human KEGG pathway data and a gene expression matrix in... |
| netw | network data |
| norm | TCGA data with normal samples |
| path | Pathway data from KEGG |
| path_net | Get human KEGG pathway data and network data in order to... |
| plotting_cross_talk | Get human KEGG pathway data and a gene expression matrix we... |
| process_matrix | Process matrix TCGA data after the selection of pairwise... |
| proc_path | Get human KEGG pathway data. |
| score_euc_dist | Score Matrix of pairwise pathway using euclidean distance |
| select_class | Select the class of TCGA data |
| SelectedSample | Select the class of TCGA data |
| StarBioTrek | Download data |
| st_dv | For TCGA data get human pathway data and creates a measure of... |
| svm_classification | SVM classification for each feature |
| tumo | TCGA data with tumour samples |
