plotting_cross_talk: Get human KEGG pathway data and a gene expression matrix we...
In claudiacava/StarBioTrek: StarBioTrek
Description
Usage
Arguments
Value
Examples
Description
plotting_matrix creates a matrix of gene expression for pathways given by the user.
Usage
1
plotting_cross_talk(DataMatrix, pathway, path_matrix)
Arguments
DataMatrix
gene expression matrix (eg.TCGA data)
pathway
pathway data as provided by getKEGGdata
path_matrix
output of the function matrix_plot
Value
a plot for pathway cross talk
Examples
1
mt<-plotting_cross_talk(DataMatrix=tumo[,1:2],pathway=path,path_matrix=list_path_plot)
claudiacava/StarBioTrek documentation built on May 28, 2019, 7:29 p.m.
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Description Usage Arguments Value Examples
Description
plotting_matrix creates a matrix of gene expression for pathways given by the user.
Usage
1 | plotting_cross_talk(DataMatrix, pathway, path_matrix)
|
Arguments
DataMatrix |
gene expression matrix (eg.TCGA data) |
pathway |
pathway data as provided by getKEGGdata |
path_matrix |
output of the function matrix_plot |
Value
a plot for pathway cross talk
Examples
1 | mt<-plotting_cross_talk(DataMatrix=tumo[,1:2],pathway=path,path_matrix=list_path_plot)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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