getNETdata: Get network data.

In claudiacava/StarBioTrek: StarBioTrek

Description

getNETdata creates a data frame with network data. Network category can be filtered among: physical interactions, co-localization, genetic interactions and shared protein domain.

Usage

getNETdata(network, organism = NULL)

Arguments

network	variable. The user can use the following parameters based on the network types to be used. PHint for Physical_interactions, COloc for Co-localization, GENint for Genetic_interactions and SHpd for Shared_protein_domains
organism	organism==NULL default value is homo sapiens

Value

dataframe with gene-gene (or protein-protein interactions)

Examples

organism="Saccharomyces_cerevisiae"
netw<-getNETdata(network="SHpd",organism)

claudiacava/StarBioTrek documentation built on May 28, 2019, 7:29 p.m.