GE_matrix: Get human KEGG pathway data and a gene expression matrix in...

Description Usage Arguments Value Examples

Description

GE_matrix creates a matrix of gene expression for pathways given by the user.

Usage

1
GE_matrix(DataMatrix, pathway)

Arguments

DataMatrix

gene expression matrix (eg.TCGA data)

pathway

pathway data as provided by getKEGGdata

Value

a matrix for each pathway ( gene expression level belong to that pathway)

Examples

1
list_path_gene<-GE_matrix(DataMatrix=tumo[,1:2],pathway=path)

claudiacava/StarBioTrek documentation built on May 28, 2019, 7:29 p.m.