gene_expression: Gene-expression measurements for various mutants of...
In clauswilke/dviz.supp: Supporting materials for Claus Wilke's data visualization book
Description
Usage
Format
Source
Examples
Description
This dataset contains gene expression measurements for 59 genes of bacteriophage T7,
measured for various modified T7 genomes.
Usage
1
Format
An object of class tbl_df (inherits from tbl, data.frame) with 413 rows and 7 columns.
Source
M. L. Paff, B. R. Jack, B. L. Smith, J. J. Bull, C. O. Wilke (2018). Combinatorial
approaches to viral attenuation. bioRxiv 299180. http://dx.doi.org/10.1101/299180
Examples
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gene_expression %>%
filter(strain == "phi9v2" & background == "wt") %>%
ggplot(aes(x=tpm_wt, y=tpm_mutant)) +
geom_abline(slope = 1, color = "grey") +
geom_text_repel(
aes(label = label),
nudge_y = -0.005,
fontface = "italic",
segment.color = NA) +
geom_point() +
scale_x_log10(limits = c(3e-4, .3), name = "wild-type RNA abundance (TPM)") +
scale_y_log10(limits = c(3e-4, .3), name = "mutant RNA abundance (TPM)") +
coord_fixed()
clauswilke/dviz.supp documentation built on Aug. 25, 2020, 2:12 a.m.
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Description Usage Format Source Examples
Description
This dataset contains gene expression measurements for 59 genes of bacteriophage T7, measured for various modified T7 genomes.
Usage
1 |
Format
An object of class tbl_df (inherits from tbl, data.frame) with 413 rows and 7 columns.
Source
M. L. Paff, B. R. Jack, B. L. Smith, J. J. Bull, C. O. Wilke (2018). Combinatorial approaches to viral attenuation. bioRxiv 299180. http://dx.doi.org/10.1101/299180
Examples
1 2 3 4 5 6 7 8 9 10 11 12 13 | gene_expression %>%
filter(strain == "phi9v2" & background == "wt") %>%
ggplot(aes(x=tpm_wt, y=tpm_mutant)) +
geom_abline(slope = 1, color = "grey") +
geom_text_repel(
aes(label = label),
nudge_y = -0.005,
fontface = "italic",
segment.color = NA) +
geom_point() +
scale_x_log10(limits = c(3e-4, .3), name = "wild-type RNA abundance (TPM)") +
scale_y_log10(limits = c(3e-4, .3), name = "mutant RNA abundance (TPM)") +
coord_fixed()
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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