clue_query_submit: Submit Clue query
In clemenshug/clueR: Query the Clue Database of Perturbations Using R
Description
Usage
Arguments
Details
Value
Description
GMT files can be generated using the clue_prepare_funs
functions or write.gmt.
Usage
1
2
clue_query_submit(up_gmt, down_gmt, name = NULL, api_key = NULL,
use_fast_tool = TRUE)
Arguments
up_gmt, down_gmt
Path to GMT files containing the lists of up-
and down-regulated genes.
name
Name for job.
api_key
Clue API key. Leave empty if it is saved in
~/.Renviron.
use_fast_tool
If TRUE (default), use experimental fast query tool.
Details
The experimental faster query tools is described at
https://clue.io/contest.
Value
Nested list of job parameters.
clemenshug/clueR documentation built on July 23, 2019, 2:55 a.m.
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Description Usage Arguments Details Value
Description
GMT files can be generated using the clue_prepare_funs
functions or write.gmt.
Usage
1 2 | clue_query_submit(up_gmt, down_gmt, name = NULL, api_key = NULL,
use_fast_tool = TRUE)
|
Arguments
up_gmt, down_gmt |
Path to GMT files containing the lists of up- and down-regulated genes. |
name |
Name for job. |
api_key |
Clue API key. Leave empty if it is saved in
|
use_fast_tool |
If TRUE (default), use experimental fast query tool. |
Details
The experimental faster query tools is described at https://clue.io/contest.
Value
Nested list of job parameters.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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