clue_parse_result: Parse result folder

In clemenshug/clueR: Query the Clue Database of Perturbations Using R

Description

Clue calculates different scores. Connectopedia gives an overview of their interpretation.

Usage

clue_parse_result(path, score_type = c("ns", "tau"),
  result_type = c("pert", "pcl"))

Arguments

path	Path to Clue result gz file or extracted folder.
score_type	Return either normalized scores (ns) or CMap connectivity scores (tau). See details.
result_type	Return either perturbagen level information (pert) or aggregated perturbagen class level information (pcl).

Value

A tibble in tidy format, with the score for a single pertubation/gene set combination per row.

clemenshug/clueR documentation built on July 23, 2019, 2:55 a.m.