API for clsdavid/FBNNet2_public
Fundamental Boolean Model and Networks
| Global functions | |
|---|---|
| BoolNet_CellCycle_Network | Man page |
| CheckRightTypeTimeseriesData | Man page Source code |
| Common_Genes_Clusters | Man page |
| Common_Genes_Leukeamia | Man page |
| ConvertToNetworkGraphicObject | Man page Source code |
| DAVID_Gene_List | Man page |
| DrawingAttractorInternal | Man page Source code |
| ExampleNetwork | Man page |
| ExampleTimeseriesData | Man page |
| FBNBioinformatics | Man page |
| FBNDataReduction | Man page Source code |
| FBNExampleNetworks | Man page |
| FBNNetwork.Graph | Man page Source code |
| FBNNetwork.Graph.DrawAttractor | Man page Source code |
| FBNNetwork.Graph.DrawDynamicForOneMatrix | Source code |
| FBNcellcycleNetwork | Man page |
| GenerateDynamicNetworkGraphicObject | Man page Source code |
| Leukeamia_Networks | Man page |
| Leukeamia_Timeseries | Man page |
| StaticNetwork | Man page Source code |
| StaticNetworkInSlice | Man page Source code |
| buildProbabilityTreeOnTargetGene | Man page Source code |
| calculate_polynomial | Source code |
| checkNumeric | Man page Source code |
| checkProbabilityTypeData | Man page Source code |
| checkSimilarity | Man page Source code |
| constructFBNCube | Man page Source code |
| constructFBNFunctions | Man page Source code |
| convertAffyRawDataIntoNormalizedStructureData | Source code |
| convertInteraction | Man page Source code |
| convertIntoExpressionTree | Man page Source code |
| convertIntoSampleTimeSeries | Man page Source code |
| convertMinedResultToFBNNetwork | Man page Source code |
| convertTimeseriesProbsetNameToGeneName | Man page Source code |
| convertToBooleanNetworkCollection | Man page Source code |
| convertToFBNNetwork | Man page Source code |
| convert_probeset_to_gene | Source code |
| convert_to_NGO | Man page Source code |
| differentiallyExpressionStudy | Source code |
| dissolve | Man page Source code |
| dividedVectorIntoSmallgroups | Man page Source code |
| doNonParallelWork | Man page Source code |
| doNonParallelWorkDecrease | Man page Source code |
| doParallelWork | Man page Source code |
| downloadGenomeDataExprs | Source code |
| extractGeneStateFromTimeSeriesCube | Man page Source code |
| filterNetworkConnections | Man page Source code |
| filterNetworkConnectionsByGenes | Man page Source code |
| filterNetworkConnectionsByInputGenes | Man page Source code |
| findAllBackwardRelatedGenes | Man page Source code |
| findAllForwardRelatedGenes | Man page Source code |
| findAllInputGenes | Man page Source code |
| findAllTargetGenes | Man page Source code |
| findBackwardRelatedNetworkByGenes | Man page Source code |
| findForwardRelatedNetworkByGenes | Man page Source code |
| flatDeMorganLaw | Man page Source code |
| generateAllCombinationBinary | Man page Source code |
| generateFBMNetwork | Man page Source code |
| generateFBNInteraction | Man page Source code |
| generateSimilarReport | Man page Source code |
| generateSimilaryReport | Man page Source code |
| genereateBoolNetTimeseries | Man page Source code |
| getFBMSuccessor | Man page Source code |
| getGenePrababilities | Man page Source code |
| getGenePrababilities_advanced | Man page Source code |
| getGenePrababilities_basic | Man page Source code |
| getGenePrababilities_measurements | Man page Source code |
| getProbabilityFromFunctionInput | Man page Source code |
| getRelatedAffyRawData | Source code |
| getRelatedGeneTimeseries | Man page Source code |
| getSpecificExpressedGenes | Man page Source code |
| getncbiseq | Man page Source code |
| identifyDifferentiallyExpressedGenes | Man page Source code |
| isAppliedDeMorganLaw | Man page Source code |
| isAtomNode | Man page Source code |
| isBooleanTypeTimeseriesData | Man page Source code |
| isSatisfied | Man page Source code |
| isSubExpression | Man page Source code |
| leukeamia_study_with_differential_output | Source code |
| loadFBNNetwork | Man page Source code |
| lvoneout | Source code |
| mapProbesetNames | Man page Source code |
| mapToGeneNameWithhgu133plus2Db | Man page Source code |
| mergeClusterNetworks | Man page Source code |
| mergeInteraction | Man page Source code |
| mergeNetwork | Man page Source code |
| mineFBNNetwork | Man page Source code |
| mineFBNNetworkStage2 | Man page Source code |
| mineFBNNetworkWithCores | Man page Source code |
| networkFiltering | Man page Source code |
| networkFixUpdate | Man page Source code |
| normalizeTimesereisRawData | Source code |
| outputFasta | Source code |
| output_annotated_genes | Man page Source code |
| output_genes | Man page Source code |
| output_timesereis_based_on_genes | Man page Source code |
| plot.PolyRegression | Source code |
| plotNetwork | Man page Source code |
| polyfit | Source code |
| powers | Source code |
| print.FBMAttractors | Man page Source code Source code |
| print.FundamentalBooleanNetwork | Man page Source code Source code |
| print.PolyRegression | Source code |
| process_cube_algorithm | Man page Source code |
| randomGenerateBinary | Man page Source code |
| randomSelection | Man page Source code |
| rbind_all_columns | Man page Source code |
| readFasta | Source code |
| reconstructTimeseries | Man page Source code |
| regenerateInteractions | Man page Source code |
| removeDuplicates | Man page Source code |
| removeFistLevelBracket | Man page Source code |
| reorderSampleTimeSeries | Man page Source code |
| rep_col | Man page Source code |
| rep_row | Man page Source code |
| reproduceSchmidtStudy | Source code |
| searchForAttractors | Man page Source code |
| search_FBN_core | Man page Source code |
| similarityBetweenMatrix | Man page Source code |
| slidingwindowplot | Source code |
| splitExpression | Man page Source code |
| transitionStates | Man page Source code |
| yeastTimeSeries | Man page |
