API for cokelaer/CellNOptR
Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data

Global functions
CNORbool Man page
CNORwrap Man page
CNOdata Man page
CNOlist Man page
CNOlist,ANY Man page
CNOlist-class Man page
CNOlist-methods Man page
CNOlistDREAM Man page
CNOlistToy Man page
CNOlistToy2 Man page
CNOlistToyMMB Man page
CellNOptR Man page
CellNOptR-package Man page
DreamModel Man page
ToyModel Man page
ToyModel2 Man page
buildBitString Man page
cSimulator Man page
checkSignals Man page
compatCNOlist Man page
compatCNOlist,CNOlist Man page
compatCNOlist,CNOlist,CNOlist-method Man page
compatCNOlist,CNOlist-method Man page
compressModel Man page
computeScoreT1 Man page
computeScoreTN Man page
cutAndPlot Man page
cutAndPlotResultsT1 Man page
cutAndPlotResultsTN Man page
cutCNOlist Man page
cutModel Man page
cutNONC Man page
cutSimList Man page
defaultParameters Man page
exhaustive Man page
expandGates Man page
findNONC Man page
gaBinaryT1 Man page
gaBinaryT2 Man page
gaBinaryTN Man page
getCues Man page
getCues,CNOlist Man page
getCues,CNOlist-method Man page
getFit Man page
getInhibitors Man page
getInhibitors,CNOlist Man page
getInhibitors,CNOlist-method Man page Man page
getSignals Man page
getSignals,CNOlist Man page
getSignals,CNOlist,CNOlist-method Man page
getSignals,CNOlist-method Man page
getStimuli Man page
getStimuli,CNOlist Man page
getStimuli,CNOlist,CNOlist-method Man page
getStimuli,CNOlist-method Man page
getTimepoints Man page
getTimepoints,CNOlist Man page
getTimepoints,CNOlist,CNOlist-method Man page
getTimepoints,CNOlist-method Man page
getVariances Man page
getVariances,CNOlist Man page
getVariances,CNOlist,CNOlist-method Man page
getVariances,CNOlist-method Man page
graph2sif Man page
indexFinder Man page
internals Man page
length Man page
length,CNOlist Man page
length,CNOlist,ANY-method Man page
length,CNOlist-method Man page
makeCNOlist Man page
mapBack Man page
model2igraph Man page
model2sif Man page
normaliseCNOlist Man page
plot Man page
plot,CNOlist Man page
plot,CNOlist,ANY Man page
plot,CNOlist,ANY,CNOlist-method Man page
plot,CNOlist,ANY-method Man page
plot,CNOlist,CNOlist Man page
plot,CNOlist,CNOlist,CNOlist-method Man page Man page Man page
plot,CNOlist,CNOlist,CNOlist-methods Man page
plot,CNOlist,CNOlist-method Man page
plot,CNOlist,missing,CNOlist-method Man page
plot,CNOlist,missing-method Man page
plot,CNOlist-method Man page
plot.CNOlist Man page
plotCNOlist Man page
plotCNOlist2 Man page
plotCNOlistLarge Man page
plotCNOlistLargePDF Man page
plotCNOlistPDF Man page
plotFit Man page
plotModel Man page
plotOptimResults Man page
plotOptimResultsPDF Man page
plotOptimResultsPan Man page
prep4Sim Man page
prep4sim Man page
preprocessing Man page
randomize Man page
randomize,CNOlist Man page
randomize,CNOlist,CNOlist-method Man page
randomize,CNOlist-method Man page
randomizeCNOlist Man page
readMIDAS Man page
readMidas Man page
readSBMLQual Man page Man page
readSIF Man page
readSif Man page
residualError Man page
setSignals<- Man page
setSignals<-,CNOlist Man page
setSignals<-,CNOlist,CNOlist-method Man page
setSignals<-,CNOlist-method Man page
sif2graph Man page
simulateT1 Man page
simulateTN Man page
simulatorT0 Man page
simulatorT1 Man page
simulatorT2 Man page
simulatorTN Man page
writeDot Man page
writeMIDAS Man page
writeNetwork Man page
writeReport Man page
writeSIF Man page
writeScaffold Man page
writeSif Man page
cokelaer/CellNOptR documentation built on May 27, 2019, 8:44 a.m.