ToyModel2: Toy model
In cokelaer/CellNOptR: Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data
Description
Usage
Format
Source
References
Description
This data object contains the Toy model from the package vignette, already loaded and formatted as a Model object, and modified for the 2 time points version (a negative fedback between cJun and Jnk (!cJun=Jnk) is added).
Usage
1
Format
ToyModel is a list with fields "reacID" (character vector), "namesSpecies" (character vector), "interMat" (numerical matrix), "notMat"(numerical matrix).
Source
This data and model is extracted from the Matlab version of CellNOpt1.0 (http://www.ebi.ac.uk/saezrodriguez/software.html#CellNetOptimizer).
References
J. Saez-Rodriguez, L. G. Alexopoulos, J. Epperlein, R. Samaga, D. A. Lauffenburger, S. Klamt and P. K. Sorger. Discrete logic modeling as a means to link protein signaling networks with functional analysis of
mammalian signal transduction, Molecular Systems Biology, 5:331, 2009.
cokelaer/CellNOptR documentation built on May 27, 2019, 8:44 a.m.
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Description Usage Format Source References
Description
This data object contains the Toy model from the package vignette, already loaded and formatted as a Model object, and modified for the 2 time points version (a negative fedback between cJun and Jnk (!cJun=Jnk) is added).
Usage
1 |
Format
ToyModel is a list with fields "reacID" (character vector), "namesSpecies" (character vector), "interMat" (numerical matrix), "notMat"(numerical matrix).
Source
This data and model is extracted from the Matlab version of CellNOpt1.0 (http://www.ebi.ac.uk/saezrodriguez/software.html#CellNetOptimizer).
References
J. Saez-Rodriguez, L. G. Alexopoulos, J. Epperlein, R. Samaga, D. A. Lauffenburger, S. Klamt and P. K. Sorger. Discrete logic modeling as a means to link protein signaling networks with functional analysis of mammalian signal transduction, Molecular Systems Biology, 5:331, 2009.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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