cell_data_set: The cell_data_set class

Description Details Fields

Description

The main class used by Monocle3 to hold single-cell expression data. cell_data_set extends the Bioconductor SingleCellExperiment class.

Details

This class is initialized from a matrix of expression values along with cell and feature metadata.

Fields

preprocess_aux

SimpleList, auxiliary information from preprocessing.

reduce_dim_aux

SimpleList, auxiliary information from reduced dimension.

principal_graph_aux

SimpleList, auxiliary information from principal graph construction

principal_graph

SimpleList of igraph objects containing principal graphs for different dimensionality reduction.

clusters

SimpleList of cluster information for different dimensionality reduction.


cole-trapnell-lab/monocle3 documentation built on April 8, 2021, 5:54 a.m.