load_mtx_data: Load data from matrix market format

View source: R/io.R

load_mtx_dataR Documentation

Load data from matrix market format

Description

Load data from matrix market format

Usage

load_mtx_data(mat_path, gene_anno_path, cell_anno_path, umi_cutoff = 100)

Arguments

mat_path

Path to the .mtx matrix market file.

gene_anno_path

Path to gene annotation file.

cell_anno_path

Path to cell annotation file.

umi_cutoff

UMI per cell cutoff, default is 100.

Value

cds object

Examples

  
    pmat<-system.file("extdata", "matrix.mtx.gz", package = "monocle3")
    prow<-system.file("extdata", "features_c3h0.txt", package = "monocle3")
    pcol<-system.file("extdata", "barcodes_c2h0.txt", package = "monocle3")
    cds <- load_mtx_data( pmat, prow, pcol)
  


cole-trapnell-lab/monocle3 documentation built on May 24, 2022, 5:25 p.m.