load_transform_models: Load transform models into a cell_data_set.

In cole-trapnell-lab/monocle3: Clustering, Differential Expression, and Trajectory Analysis for Single-Cell RNA-Seq

Load transform models into a cell_data_set.

Description

Load transform models into a cell_data_set where the transform models directory was made using either save_transform_models() or save_monocle_objects(). This function over-writes existing models in the cell_data_set. For more information see the help information for save_transform_models() and save_monocle_objects().

Usage

load_transform_models(cds, directory_path)

Arguments

cds	a cell_data_set to be transformed using the models.
directory_path	a string giving the name of the directory from which to read the model files. The model file directory is made by either save_transform_models() or save_monocle_objects().

Value

a cell_data_set with the transform models loaded by load_transform_models().

Examples

  ## Not run: 
    cds <- load_a549()
    cds <- preprocess_cds(cds)
    cds <- reduce_dimension(cds)
    save_transform_models(cds, 'tm')
    cds1 <- load_a549()
    cds1 <- load_transform_models(cds1, 'tm')
  
## End(Not run)

cole-trapnell-lab/monocle3 documentation built on June 11, 2025, 11:22 p.m.