API for comm03/trysomesigs
Somatic Signatures
| Global functions | |
|---|---|
| MutationalSignatures | Man page |
| MutationalSignatures-class | Man page |
| SomaticSignatures | Man page |
| SomaticSignatures-package | Man page |
| assessNumberSignatures | Man page |
| cluster-spectrum | Man page |
| clusterSpectrum | Man page |
| decomposition-signatures | Man page |
| dfConvertColumns | Man page |
| findSignatures | Man page |
| fitted | Man page |
| fitted,MutationalSignatures-method | Man page |
| gcContent | Man page |
| hs-chrs | Man page |
| hsAllosomes | Man page |
| hsAutosomes | Man page |
| hsLinear | Man page |
| hsToplevel | Man page |
| identifySignatures | Man page |
| k3we | Man page |
| k3wg | Man page |
| kmerFrequency | Man page |
| kmers | Man page |
| kmers-data | Man page |
| motifMatrix | Man page |
| mutationContext | Man page |
| mutationContextMutect | Man page |
| mutationDistance | Man page |
| mutational-normalization | Man page |
| mutational-plots | Man page |
| mutational-signatures | Man page |
| ncbi | Man page |
| nmfDecomposition | Man page |
| nmfSignatures | Man page |
| normalizeMotifs | Man page |
| observed | Man page |
| observed,MutationalSignatures-method | Man page |
| pcaDecomposition | Man page |
| pcaSignatures | Man page |
| plotFittedSpectrum | Man page |
| plotMutationSpectrum | Man page |
| plotNumberSignatures | Man page |
| plotObservedSpectrum | Man page |
| plotRainfall | Man page |
| plotSampleMap | Man page |
| plotSamples | Man page |
| plotSignatureMap | Man page |
| plotSignatures | Man page |
| plotVariantAbundance | Man page |
| readMutect | Man page |
| samples | Man page |
| samples,MutationalSignatures-method | Man page |
| sca-data | Man page |
| sca_mm | Man page |
| sca_motifs_tiny | Man page |
| sca_sigs | Man page |
| seqchar | Man page |
| show | Man page |
| show,MutationalSignatures-method | Man page |
| signatures | Man page |
| signatures,MutationalSignatures-method | Man page |
| signatures21 | Man page |
| signatures21-data | Man page |
| sigs_nmf | Man page |
| sigs_pca | Man page |
| ucsc | Man page |
| variants-utils | Man page |
