mutational-plots: Mutational Plots
In comm03/trysomesigs: Somatic Signatures
Description
Usage
Arguments
Details
Value
Description
Plots for variant analysis
Usage
1
plotVariantAbundance(x, group = NULL, alpha = 0.5, size = 2)
Arguments
x
A VRanges object [required].
group
Grouping variable, refers to a column name in 'x'. By
default, no grouping is performed.
alpha
Alpha value for data points.
size
Size value for data points.
Details
The 'plotVariantAbundance' shows the variant frequency in relation to
the total coverage at each variant position. This can be useful for
examining the support of variant calls.
Value
A 'ggplot' object.
comm03/trysomesigs documentation built on May 15, 2019, 1:14 p.m.
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Description Usage Arguments Details Value
Description
Plots for variant analysis
Usage
1 | plotVariantAbundance(x, group = NULL, alpha = 0.5, size = 2)
|
Arguments
x |
A VRanges object [required]. |
group |
Grouping variable, refers to a column name in 'x'. By default, no grouping is performed. |
alpha |
Alpha value for data points. |
size |
Size value for data points. |
Details
The 'plotVariantAbundance' shows the variant frequency in relation to the total coverage at each variant position. This can be useful for examining the support of variant calls.
Value
A 'ggplot' object.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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