Man pages for compbiomed/ASSIGN
Adaptive Signature Selection and InteGratioN (ASSIGN)
| assign.convergence | Check the convergence of the MCMC chain |
| assign.cv.output | Cross validation output |
| assign.mcmc | The Gibbs sampling algorithm to approximate the joint... |
| assign.output | Prediction/validation output for test data |
| assign.preprocess | Input data preprocessing |
| assign.summary | Summary of the model parameters estimated by the Gibbs... |
| assign.wrapper | ASSIGN All-in-one function |
| ComBat.step2 | Perform the second step of ComBat |
| excludegenes | Exclude Gene List |
| gather_assign_results | Gather the ASSIGN results in a specific directory |
| geneList1 | Pathway signature gene sets |
| gfrn_geneList | Pathway Signature Gene Lists |
| merge_drop | Combine two data frames |
| optimizeGFRN | Optimize GFRN gene lists lengths |
| pcaplot | Display a PCA Plot of the Data |
| runassignGFRN | Run optimized single pathway ASSIGN |
| testData1 | Gene expression profiling from cancer patients (test dataset) |
| trainingData1 | Gene expression profiling from cell line perturbation... |
