load10X: Load a collection of 10X data-sets

Description Usage Arguments Value See Also

View source: R/load10X.R

Description

Loads unfiltered 10X data from each data-set and identifies which droplets are cells using the cellranger defaults.

Usage

1
load10X(dataDirs, channelNames = NULL, ...)

Arguments

dataDirs

Vector of top level cellranger output directories (the directory that contains the "raw_gene_bc_matrices" folder).

channelNames

To make droplet barcodes unique across experiment, each channel needs its own unique label. If not given, this is set numerically.

...

Extra parameters passed to SoupChannel construction function.

Value

A SoupChannelList object containing the count tables for each 10X dataset.

See Also

SoupChannel SoupChannelList estimateSoup


constantAmateur/SoupX documentation built on July 23, 2018, 9:20 a.m.