Files in constantAmateur/SoupX
Single Cell mRNA Soup eXterminator

.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/adjustCounts.R R/autoEstCont.R R/calculateContaminationFraction.R R/classFunctions.R R/data.R R/estimateNonExpressingCells.R R/estimateSoup.R R/load10X.R R/package.R R/plotFunctions.R R/quickMarkers.R R/setProperties.R R/utils.R README.md cran-comments.md
data/PBMC_metaData.RData
data/PBMC_sc.RData
data/datalist
data/scToy.RData
inst/.DS_Store
inst/CITATION
inst/doc/pbmcTutorial.R inst/doc/pbmcTutorial.Rmd
inst/doc/pbmcTutorial.html
inst/extdata/.DS_Store
inst/extdata/toyData/.DS_Store
inst/extdata/toyData/filtered_gene_bc_matrices/.DS_Store
inst/extdata/toyData/filtered_gene_bc_matrices/GRCh38/barcodes.tsv
inst/extdata/toyData/filtered_gene_bc_matrices/GRCh38/genes.tsv
inst/extdata/toyData/filtered_gene_bc_matrices/GRCh38/matrix.mtx
inst/extdata/toyData/metaData.tsv
inst/extdata/toyData/raw_gene_bc_matrices/.DS_Store
inst/extdata/toyData/raw_gene_bc_matrices/GRCh38/barcodes.tsv
inst/extdata/toyData/raw_gene_bc_matrices/GRCh38/genes.tsv
inst/extdata/toyData/raw_gene_bc_matrices/GRCh38/matrix.mtx
man/PBMC_metaData.Rd man/PBMC_sc.Rd man/SoupChannel.Rd man/SoupX.Rd man/adjustCounts.Rd man/alloc.Rd man/autoEstCont.Rd man/calculateContaminationFraction.Rd man/estimateNonExpressingCells.Rd man/estimateSoup.Rd man/expandClusters.Rd man/initProgBar.Rd man/load10X.Rd man/plotChangeMap.Rd man/plotMarkerDistribution.Rd man/plotMarkerMap.Rd man/plotSoupCorrelation.Rd man/print.SoupChannel.Rd man/quickMarkers.Rd man/scToy.Rd man/setClusters.Rd man/setContaminationFraction.Rd man/setDR.Rd man/setSoupProfile.Rd vignettes/pbmcTutorial.Rmd
constantAmateur/SoupX documentation built on Nov. 2, 2022, 10:16 a.m.