Files in constantAmateur/SoupX
Single Cell mRNA Soup eXterminator
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/adjustCounts.R
R/autoEstCont.R
R/calculateContaminationFraction.R
R/classFunctions.R
R/data.R
R/estimateNonExpressingCells.R
R/estimateSoup.R
R/load10X.R
R/package.R
R/plotFunctions.R
R/quickMarkers.R
R/setProperties.R
R/utils.R
README.md
cran-comments.md
data/PBMC_metaData.RData
data/PBMC_sc.RData
data/datalist
data/scToy.RData
inst/.DS_Store
inst/CITATION
inst/doc/pbmcTutorial.R
inst/doc/pbmcTutorial.Rmd
inst/doc/pbmcTutorial.html
inst/extdata/.DS_Store
inst/extdata/toyData/.DS_Store
inst/extdata/toyData/filtered_gene_bc_matrices/.DS_Store
inst/extdata/toyData/filtered_gene_bc_matrices/GRCh38/barcodes.tsv
inst/extdata/toyData/filtered_gene_bc_matrices/GRCh38/genes.tsv
inst/extdata/toyData/filtered_gene_bc_matrices/GRCh38/matrix.mtx
inst/extdata/toyData/metaData.tsv
inst/extdata/toyData/raw_gene_bc_matrices/.DS_Store
inst/extdata/toyData/raw_gene_bc_matrices/GRCh38/barcodes.tsv
inst/extdata/toyData/raw_gene_bc_matrices/GRCh38/genes.tsv
inst/extdata/toyData/raw_gene_bc_matrices/GRCh38/matrix.mtx
man/PBMC_metaData.Rd
man/PBMC_sc.Rd
man/SoupChannel.Rd
man/SoupX.Rd
man/adjustCounts.Rd
man/alloc.Rd
man/autoEstCont.Rd
man/calculateContaminationFraction.Rd
man/estimateNonExpressingCells.Rd
man/estimateSoup.Rd
man/expandClusters.Rd
man/initProgBar.Rd
man/load10X.Rd
man/plotChangeMap.Rd
man/plotMarkerDistribution.Rd
man/plotMarkerMap.Rd
man/plotSoupCorrelation.Rd
man/print.SoupChannel.Rd
man/quickMarkers.Rd
man/scToy.Rd
man/setClusters.Rd
man/setContaminationFraction.Rd
man/setDR.Rd
man/setSoupProfile.Rd
vignettes/pbmcTutorial.Rmd
