setClusters: Sets clustering for SoupChannel

In constantAmateur/SoupX: Single Cell mRNA Soup eXterminator

Sets clustering for SoupChannel

Description

Adds or updates clustering information to meta-data table in SoupChannel object.

Usage

setClusters(sc, clusters)

Arguments

sc	A SoupChannel object.
clusters	A named vector, where entries are the cluster IDs and names are cellIDs. If no names are provided, the order is assumed to match the order in sc$metaData.

Value

An updated SoupChannel object with clustering information stored.

Examples

sc = load10X(system.file('extdata','toyData',package='SoupX'))
mDat = read.table(system.file('extdata','toyData','metaData.tsv',package='SoupX'),sep='\t')
sc = setClusters(sc,mDat$res.1)

constantAmateur/SoupX documentation built on Nov. 2, 2022, 10:16 a.m.