Files in coregenomics/groHMM
GRO-seq Analysis Pipeline
.Rbuildignore
.dir-locals.el
.gitattributes
.gitignore
.lintr
.travis.yml
DESCRIPTION
NAMESPACE
NEWS
R/breakTranscriptsOnGenes.R
R/detectTranscripts.R
R/expressedGenes.R
R/fitDistributions.R
R/getTxDensity.R
R/limitToXkb.R
R/makeConsensusAnnotations.R
R/metaGene.R
R/pausingIndex.R
R/polymeraseWave.R
R/utils.R
R/windowAnalysis.R
README.md
groHMM.Rproj
inst/.lintr
inst/CITATION
inst/NEWS
inst/extdata/S0mR1.bam
inst/extdata/S40mR1.bam
inst/extdata/Vignette.RData
man/RgammaMLE.Rd
man/Rnorm.Rd
man/Rnorm.exp.Rd
man/breakTranscriptsOnGenes.Rd
man/combineTranscripts.Rd
man/detectTranscripts.Rd
man/evaluateHMMInAnnotations.Rd
man/expressedGenes.Rd
man/getTxDensity.Rd
man/groHMM-package.Rd
man/limitToXkb.Rd
man/makeConsensusAnnotations.Rd
man/metaGene.Rd
man/pausingIndex.Rd
man/polymeraseWave.Rd
man/runMetaGene.Rd
man/windowAnalysis.Rd
src/AnnotateProbes.c
src/DecayAlgorithm.c
src/MLEfit.c
src/RegisterRRoutines.c
src/UsefulValues.h
src/Windowing.c
src/hmmEM.c
src/hmmFwBw.c
src/hmmHeader.h
src/hmmMiscFunctions.c
src/hmmViterbi.c
tests/testthat.R
tests/testthat/helper_fixtures.R
tests/testthat/sr1.rda
tests/testthat/test_gene_boundary_corrections.R
tests/testthat/test_gene_expression.R
tests/testthat/test_hmm.R
tests/testthat/test_utils.R
tests/testthat/test_zzz_style.R
vignettes/GROseqData.png
vignettes/GROseqHMM.png
vignettes/groHMM.Rmd
vignettes/groHMM.bib
