In cpanse/NestLink: NestLink an R data package to guide through Engineered Peptide Barcodes for In-Depth Analyzes of Binding Protein Ensembles

Comparizon

To validate our Retention Time (RT) prediction in this vignette file, we compare the predicted hydrophobicity value using the ssrc method @pmid15238601 implemented in the r CRANpkg("protViz") package @protViz.

The following code snippet performs the comparison on the F255744 data. The file contains amino acid sequences representing the designed FlyCodes.

library(NestLink)

# load(url("http://fgcz-ms.uzh.ch/~cpanse/p1875/F255744.RData"))
# F255744 <- as.data.frame.mascot(F255744) 
# now available through ExperimentHub

library(ExperimentHub)
eh <- ExperimentHub(); 

load(query(eh, c("NestLink", "F255744.RData"))[[1]])

.ssrc.mascot(F255744, scores = c(10, 20, 40, 50), 
             pch = 16, 
             col = rgb(0.1,0.1,0.1,
                       alpha = 0.1)
)

Session info

Here is the output of sessionInfo() on the system on which this document was compiled:

sessionInfo()

References

cpanse/NestLink documentation built on May 16, 2022, 2:33 a.m.