get_five_prime_flank_motif: Get a seqlogo for flanking region across five prime end of...

In cparsania/parcutils: Utility Functions To Deal Day To Day Bioinformatics Tasks.

Get a seqlogo for flanking region across five prime end of the genomic range.

Description

given an object of GenomicRanges the function generates a seqlogo of the region flanked around five prime end.

Usage

get_five_prime_flank_motif(
  x,
  y = BSgenome.Hsapiens.UCSC.hg38::BSgenome.Hsapiens.UCSC.hg38,
  extend = 30
)

Arguments

x	an object of the class GenomicRanges
y	an object of class BSgenome, default BSgenome.Hsapiens.UCSC.hg38::BSgenome.Hsapiens.UCSC.hg38
extend	an integer, default 30, denoting number of basepairs to extend from five prime end of the range.

Value

a list containing ggseqlogo and sequences used to generate the logo.

cparsania/parcutils documentation built on Oct. 27, 2024, 4:55 a.m.