get_genes_from_event_name: Get gene names from spliceWiz's EventName column.

In cparsania/parcutils: Utility Functions To Deal Day To Day Bioinformatics Tasks.

Get gene names from spliceWiz's EventName column.

Description

Get gene names from spliceWiz's EventName column.

Usage

get_genes_from_event_name(x)

Arguments

x	a character vector denoting EventNames of SpliceWiz.

Value

a character vector of gene names

Examples

se <- SpliceWiz::SpliceWiz_example_NxtSE(novelSplicing = TRUE)
SpliceWiz::colData(se)$treatment <- rep(c("A", "B"), each = 3)
SpliceWiz::colData(se)$replicate <- rep(c("P","Q","R"), 2)
res_edgeR <- SpliceWiz::ASE_edgeR(se, "treatment", "A", "B", useQL = FALSE)
get_genes_from_event_name(res_edgeR$EventName)

cparsania/parcutils documentation built on Oct. 27, 2024, 4:55 a.m.