import_topn_bed_features: Import top features (ranked by score) from a bed file.

In cparsania/parcutils: Utility Functions To Deal Day To Day Bioinformatics Tasks.

Import top features (ranked by score) from a bed file.

Description

Import top features (ranked by score) from a bed file.

Usage

import_topn_bed_features(bed_feature_file, topn = 5000, center = TRUE, ...)

Arguments

bed_feature_file	a character string denoting a valid bed file.
topn	a numeric value, default 5000, denoting number of top features to keep. Top features are selected by a score column score.
center	logical, denoting whether to align each feature by central position. If TRUE, default, it will return a ranges of single nucleotide (width = 0) denting a central position of each feature.
...	Other arguments pass to the function rtracklayer::import.bed().

Value

an object of the GRanges containing topn features.

Examples

## Not run: 
# TODO

## End(Not run)

cparsania/parcutils documentation built on Oct. 27, 2024, 4:55 a.m.