save_go_plots: Save GO plot(s) in .pdf files.

In cparsania/parcutils: Utility Functions To Deal Day To Day Bioinformatics Tasks.

Save GO plot(s) in .pdf files.

Description

Save GO plot(s) in .pdf files.

Usage

save_go_plots(
  x,
  output_dir = ".",
  output_file_suffix = "go_plot",
  height = 10,
  width = 10
)

Arguments

x	x an object of class 'parcutils_go_results' which can be generated using the function get_go_emap_plot()
output_dir	a character string, default "./", denoting a path to output file.
output_file_suffix	a character string, default "go_plot", denoting a suffix for go plot pdf files. If default used, the name of output file will be <name_of_DE_comparison>_<up/down>_go_plot.pdf. For e.g. for up regulated genes from the comparison treatment_VS_control the file name will be
height	plot height in inch, default 10.
width	plot width in inch, default 10. treatment_VS_control_up_go_plot.pdf

Value

It saves file into a dir.

cparsania/parcutils documentation built on Oct. 27, 2024, 4:55 a.m.