Files in crhisto/SCDC
Bulk RNA-seq deconvolution by scRNA-seq with multi-reference datasets
.Rbuildignore
.Rhistory
.gitattributes
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/Basic_Functions.R
R/Deconvolution.R
R/ENSEMBLE.R
R/Visualization.R
README.Rmd
README.md
SCDC.Rproj
Thumbs.db
_pkgdown.yaml
docs/404.html
docs/Thumbs.db
docs/_config.yml
docs/articles/SCDC.html
docs/articles/cqc.png
docs/articles/demoplot.png
docs/articles/fadista_LMplot.png
docs/articles/fadista_ens.png
docs/articles/hc_3cl.png
docs/articles/index.html
docs/articles/mammarygland.png
docs/articles/web/SCDC_data.html
docs/authors.html
docs/demoplot.png
docs/docsearch.css
docs/docsearch.js
docs/framework.PNG
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/CreateSCDCpropObj.html
docs/reference/DemoPlot.html
docs/reference/ENSEMBLE_prop.html
docs/reference/SCDC_ENSEMBLE.html
docs/reference/SCDC_ENSEMBLE_subcl.html
docs/reference/SCDC_basis.html
docs/reference/SCDC_basis_ONE.html
docs/reference/SCDC_peval.html
docs/reference/SCDC_prop.html
docs/reference/SCDC_prop_ONE.html
docs/reference/SCDC_prop_ONE_subcl_marker.html
docs/reference/SCDC_prop_subcl_marker.html
docs/reference/SCDC_qc.html
docs/reference/SCDC_qc_ONE.html
docs/reference/SCDC_yeval.html
docs/reference/generateBulk_allcells.html
docs/reference/generateBulk_norep.html
docs/reference/getCPM0.html
docs/reference/getESET.html
docs/reference/getSearchGrid.html
docs/reference/index.html
docs/reference/my_qc.html
docs/reference/wheat_map.html
docs/reference/wt_prop.html
docs/reference/wt_y.html
docs/sitemap.xml
framework.PNG
man/CreateSCDCpropObj.Rd
man/DemoPlot.Rd
man/SCDC_ENSEMBLE.Rd
man/SCDC_basis.Rd
man/SCDC_basis_ONE.Rd
man/SCDC_peval.Rd
man/SCDC_prop.Rd
man/SCDC_prop_ONE.Rd
man/SCDC_prop_ONE_subcl_marker.Rd
man/SCDC_prop_subcl_marker.Rd
man/SCDC_qc.Rd
man/SCDC_qc_ONE.Rd
man/SCDC_yeval.Rd
man/bootstrap_gene_finder.Rd
man/calculate_foldchange.Rd
man/calculate_genes_using_dbscan.Rd
man/custom_apply.Rd
man/generateBulk_allcells.Rd
man/generateBulk_norep.Rd
man/getCPM0.Rd
man/getESET.Rd
man/getSearchGrid.Rd
man/iteration_over_clusters_default_parallelized.Rd
man/iteration_over_clusters_parallelized.Rd
man/iteration_over_clusters_parallelized_wilcox.Rd
man/iteration_over_clusters_parallelized_wilcox_boostrap.Rd
man/save_log_file.Rd
man/wheat_map.Rd
man/wt_prop.Rd
man/wt_y.Rd
vignettes/.gitignore
vignettes/SCDC.Rmd
vignettes/cqc.png
vignettes/data/MIX3cl__bulkESET.rds
vignettes/data/MIX3cl_scESET.rds
vignettes/data/baron.rds
vignettes/data/fadista_77.rds
vignettes/data/peroubulk10x_fvb34.rds
vignettes/data/peroubulkff_fvb34.rds
vignettes/data/qc_baron.rds
vignettes/data/qc_perou.rds
vignettes/data/qc_segerstolpe.rds
vignettes/data/qc_tmouse.rds
vignettes/data/qc_xin.rds
vignettes/data/segerstolpe.rds
vignettes/demoplot.png
vignettes/fadista_LMplot.png
vignettes/fadista_ens.png
vignettes/hc_3cl.png
vignettes/mammarygland.png
vignettes/web/SCDC_data.Rmd
