Autotuner-class: Autotuner

In crmclean/AutoTuner: Automated parameter selection for untargeted metabolomics data processing

Description

This file contains the skeleton to the Autotuner class used through out Autoutuner.

This object is a generic object designed to run the different functions of the Autotuner package. The slots represent content or data that the package uses throughout the different functions.

Slots

time

A list containing vectors of scan time points from each sample.

intensity

A list containing vectors of scan intensity points from each sample.

peaks

Regions within each sample identified as peaks by slidingwindow analysis.

peak_table

A data.frame containing information on each peak after further processing is done to the data.

peak_difference

A data.frame containing information on how peaks are eluted differently over time.

metadata

A data.frame containing metadata for all samples to be run on Autotuner.

file_paths

A string path that leads to the samples to be run on Autotuner.

file_col

A string for the column name of the column within the metadata that has specific sample names.

factorCol

A string for the column name of the column within the metadata that has specific sample class names.

crmclean/AutoTuner documentation built on Jan. 29, 2021, 4:48 p.m.