plot_peaks: @title plot_peaks

In crmclean/AutoTuner: Automated parameter selection for untargeted metabolomics data processing

Description

@description This funciton plots the peak identified within chromatography.

Usage

plot_peaks(Autotuner, boundary = 10, peak, showLegend = TRUE)

Arguments

Autotuner	An Autotuner objected containing sample specific raw data.
boundary	UI input value that defines the boundary around the peak to visualize it.
peak	A Numeric index obtained from UI that indicates which peak should be visualized.
showLegend	A boolean dictating if a legend should be shown or not. Resolves issue where legend can cover chromatographic data

Details

This function plots individual peaks selected by signal processing and expanded with a regression to allow the user to validate the selected signal processing parameters.

Value

This function outputs plots that are meant to go into the peakVis UI.

Examples

Autotuner <- readRDS(system.file("extdata/Autotuner.rds",
package="Autotuner"))
plot_peaks(Autotuner = Autotuner, boundary = 100, peak = 1)

crmclean/AutoTuner documentation built on Jan. 29, 2021, 4:48 p.m.