tnsGet-methods: Get information from slots in a TNS object

In csgroen/RTNsurvival: Survival analysis using transcriptional networks inferred by the RTN package

Description

Get information from individual slots in a TNS object and any available results from a previous analysis.

Usage

## S4 method for signature 'TNS'
tnsGet(tns, what)

Arguments

tns	A TNS object.
what	A string specifying what should be retrieved from the object. Options: 'status','survivalData', 'regulonActivity', 'TNI', 'para', 'kmTable', 'kmFit', 'coxTable', 'coxFit', 'kmInteractionTable', 'kmInteractionFit', 'coxInteractionTable', 'coxInteractionFit', and 'regulatoryElements'.

Value

Content from slots in the TNS object.

Examples

# load survival data
data(survival.data)

# load TNI-object
data(stni, package = "RTN")

stns <- tni2tnsPreprocess(stni, survivalData = survival.data, 
keycovar = c('Grade','Age'), time = 1, event = 2)
stns <- tnsGSEA2(stns)
regulonActivity <- tnsGet(stns, 'regulonActivity')

csgroen/RTNsurvival documentation built on May 20, 2019, 1:49 p.m.