API for ctlab/gatom
Finding an Active Metabolic Module in Atom Transition Network
| Global functions | |
|---|---|
| .intersectionSize | Source code |
| .makeEdgeTable | Source code |
| .makeVertexTable | Source code |
| .replaceNA | Source code |
| .reversefdrThreshold | Source code |
| abbreviateLabels | Man page Source code |
| addHighlyExpressedEdges | Man page Source code |
| center | Source code |
| centroid | Source code |
| collapseAtomsIntoMetabolites | Man page Source code |
| connectAtomsInsideMetabolite | Man page Source code |
| convertPvalDT | Source code |
| createShinyCyJSWidget | Man page Source code |
| findColumn | Source code |
| findIdColumn | Source code |
| force_alg | Source code |
| gEx | Man page |
| gatom | Man page |
| gene.de.rawEx | Man page |
| getAttrDotStrings | Source code |
| getAttrXmlStrings | Source code |
| getDotColor | Source code |
| getDotEdgeStyleAttributes | Source code |
| getDotNodeStyleAttributes | Source code |
| getDotSize | Source code |
| getDotTooltip | Source code |
| getEdgeDotStrings | Source code |
| getEdgeXmlStrings | Source code |
| getFontSizeJs | Source code |
| getGeneDEMeta | Man page Source code |
| getGraphDotString | Source code |
| getJsEdgeStyleAttributes | Source code |
| getJsNodeStyleAttributes | Source code |
| getJsTooltip | Source code |
| getMetDEMeta | Man page Source code |
| getMetabolicPathways | Man page Source code |
| getModulePdfLayout | Source code |
| getModuleXmlString | Source code |
| getNodeDotStrings | Source code |
| getNodeXmlStrings | Source code |
| getPdfEdgeStyleAttributes | Source code |
| getPdfModuleAttrs | Source code |
| getPdfNodeStyleAttributes | Source code |
| getPdfSize | Source code |
| getRDFXmlString | Source code |
| get_elabel_boxes | Source code |
| get_nlabel_boxes | Source code |
| gsEx | Man page |
| idsListFromAnnotation | Source code |
| intersect_box | Source code |
| intersect_segm | Source code |
| mEx | Man page |
| makeMetabolicGraph | Man page Source code |
| makeOrgGatomAnnotation | Man page Source code |
| make_layout | Source code |
| met.de.rawEx | Man page |
| met.kegg.dbEx | Man page |
| n_intersect_segm | Source code |
| networkEx | Man page |
| on_segment | Source code |
| org.Mm.eg.gatom.annoEx | Man page |
| orientation | Source code |
| prepareDE | Man page Source code |
| prepareDEColumn | Source code |
| quad_dist | Source code |
| range01 | Source code |
| saveModuleToDot | Man page Source code |
| saveModuleToHtml | Man page Source code |
| saveModuleToPdf | Man page Source code |
| saveModuleToXgmml | Man page Source code |
| scoreGraph | Man page Source code |
| semiheight | Source code |
| semiwidth | Source code |
| splitIds | Source code |
| store_all_info | Source code |
| styleWidget | Man page Source code |
| unit_vector | Source code |
| xmlNodeString | Source code |
