prepareDE: Makes data.table with differential expression results...

In ctlab/gatom: Finding an Active Metabolic Module in Atom Transition Network

Makes data.table with differential expression results containing all columns required for gatom and in the expected format based on metadata object

Description

Makes data.table with differential expression results containing all columns required for gatom and in the expected format based on metadata object

Usage

prepareDE(de.raw, de.meta)

Arguments

de.raw	Table with differential expression results, an object convertable to data.frame
de.meta	Object with differential expression table metadata acquired with getGeneDEMeta or getMetDEMeta functions

Value

data.table object with converted differential expression table

Examples

data("org.Mm.eg.gatom.annoEx")
data("gene.de.rawEx")
de.meta <- getGeneDEMeta(gene.de.rawEx, org.gatom.anno = org.Mm.eg.gatom.annoEx)
de <- prepareDE(gene.de.rawEx, de.meta)

ctlab/gatom documentation built on Oct. 22, 2023, 4:30 p.m.