API for ctlab/gatom
Finding an Active Metabolic Module in Atom Transition Network

Global functions
.intersectionSize Source code
.makeEdgeTable Source code
.makeVertexTable Source code
.replaceNA Source code
.reversefdrThreshold Source code
addHighlyExpressedEdges Source code
center Source code
centroid Source code
collapseAtomsIntoMetabolites Source code
connectAtomsInsideMetabolite Source code
convertPvalDT Source code
findColumn Source code
findIdColumn Source code
force_alg Source code
getAttrDotStrings Source code
getAttrXmlStrings Source code
getDotColor Source code
getDotEdgeStyleAttributes Source code
getDotNodeStyleAttributes Source code
getDotSize Source code
getDotTooltip Source code
getEdgeDotStrings Source code
getEdgeXmlStrings Source code
getGeneDEMeta Man page Source code
getGraphDotString Source code
getMetDEMeta Man page Source code
getModulePdfLayout Source code
getModuleXmlString Source code
getNodeDotStrings Source code
getNodeXmlStrings Source code
getPdfEdgeStyleAttributes Source code
getPdfModuleAttrs Source code
getPdfNodeStyleAttributes Source code
getPdfSize Source code
getRDFXmlString Source code
get_elabel_boxes Source code
get_nlabel_boxes Source code
idsListFromAnnotation Source code
intersect_box Source code
intersect_segm Source code
makeAtomGraph Source code
makeOrgGatomAnnotation Source code
make_layout Source code
n_intersect_segm Source code
on_segment Source code
orientation Source code
prepareDE Man page Source code
prepareDEColumn Source code
quad_dist Source code
range01 Source code
readGraph Source code
saveModuleToDot Man page Source code
saveModuleToPdf Man page Source code
saveModuleToXgmml Man page Source code
scoreGraph Source code
semiheight Source code
semiwidth Source code
solveSgmwcsRandHeur Source code
store_all_info Source code
unit_vector Source code
writeSgmwcsInstance Source code
xmlNodeString Source code
ctlab/gatom documentation built on May 14, 2019, 12:29 p.m.