Files in ctlab/gatom
Finding an Active Metabolic Module in Atom Transition Network
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.gitignore
.travis.yml
DESCRIPTION
LICENCE
NAMESPACE
R/annotation.R
R/de.R
R/force_alg.R
R/gatom-package.R
R/gatom.R
R/io.R
R/utils.R
README.Rmd
README.md
data/gEx.rda
data/gene.de.rawEx.rda
data/gsEx.rda
data/mEx.rda
data/met.de.rawEx.rda
data/met.kegg.dbEx.rda
data/networkEx.rda
data/org.Mm.eg.gatom.annoEx.rda
inst/CITATION
inst/M0.vs.M1.png
inst/extdata/README
inst/extdata/mets2mask.lst
inst/scripts/example.R
inst/scripts/make_annotations.R
man/abbreviateLabels.Rd
man/addHighlyExpressedEdges.Rd
man/collapseAtomsIntoMetabolites.Rd
man/connectAtomsInsideMetabolite.Rd
man/createShinyCyJSWidget.Rd
man/gEx.Rd
man/gatom.Rd
man/gene.de.rawEx.Rd
man/getGeneDEMeta.Rd
man/getMetDEMeta.Rd
man/getMetabolicPathways.Rd
man/gsEx.Rd
man/mEx.Rd
man/makeMetabolicGraph.Rd
man/makeOrgGatomAnnotation.Rd
man/met.de.rawEx.Rd
man/met.kegg.dbEx.Rd
man/networkEx.Rd
man/org.Mm.eg.gatom.annoEx.Rd
man/prepareDE.Rd
man/saveModuleToDot.Rd
man/saveModuleToHtml.Rd
man/saveModuleToPdf.Rd
man/saveModuleToXgmml.Rd
man/scoreGraph.Rd
man/styleWidget.Rd
tests/testthat.R
tests/testthat/test_annotation.R
tests/testthat/test_de.R
tests/testthat/test_gatom.R
tests/testthat/test_io.R
vignettes/gatom-tutorial.Rmd
