Man pages for cuhklinlab/RA3
The R-based implementation of "A reference-guided approach for epigenetic characterization of single cells".
| Dataprep | Normalize count matrix |
| getbetaMAP | getbetaMAP |
| getbetaMLE | getbetaMLE |
| getClusterSpecificPvalue | getClusterSpecificPvalue |
| getContrast | getContrast |
| getdesign | getdesign |
| getSigmaPrior | getSigmaPrior |
| RA3_clustering | Cell clustering based on the latent features output by RA3 |
| RA3_EM | EM algorithm for RA3 |
| RA3_motif | Motif enrichment analysis based on the latent features output... |
| RA3_pcatsne | Dimension reduction using PCA and t-SNE |
| RA3_RefProj | Dimension reduction using reference projection approach |
| RA3_TrajInf | Trajectory inference based on the latent features output by... |
| runRA3 | Run RA3 for integrative analysis of scATAC-seq data |
