RA3_RefProj: Dimension reduction using reference projection approach

In cuhklinlab/RA3: The R-based implementation of "A reference-guided approach for epigenetic characterization of single cells".

Description

This function deploys a reference projection approach on the TF-IDF normalized scCAS data, then uses t-SNE for further dimension reduction.

Usage

RA3_RefProj(ref_data_nml, sc_data_nml, rand_seed = 23)

Arguments

sc_data_nml

TF-IDF normalized scCAS data, the output of function Dataprep

Value

bulk_tsne

tsne representation for projected scCAS data

Examples

result <- RA3_RefProj(ref_data_nml,sc_data_nml,rand_seed = 2020)

cuhklinlab/RA3 documentation built on March 18, 2021, 4:38 p.m.