RA3_pcatsne: Dimension reduction using PCA and t-SNE

In cuhklinlab/RA3: The R-based implementation of "A reference-guided approach for epigenetic characterization of single cells".

Description

Implement PCA on the TF-IDF normalized scCAS data, then deploy t-SNE on the component scores.

Usage

RA3_pcatsne(sc_data_nml, rand_seed = 23)

Arguments

sc_data_nml

TF-IDF normalized scCAS data, the output of function Dataprep

Value

pca_tsne

tsne representation for component scores of the TF-IDF normalized scCAS data

Examples

result <- RA3_pcatsne(sc_data_nml)

cuhklinlab/RA3 documentation built on March 18, 2021, 4:38 p.m.