RA3_clustering: Cell clustering based on the latent features output by RA3

In cuhklinlab/RA3: The R-based implementation of "A reference-guided approach for epigenetic characterization of single cells".

Description

Implement louvain clustering based on the output of RA3, using package Seurat.

Usage

RA3_clustering(H, n_cluster)

Arguments

H	the extracted features H output by runRA3, colomns referring to cells
n_cluster	the number of clusters

Value

Seurat_louvain

vector containing cell cluster assignment

Examples

result <- RA3_clustering(H, n_cluster)

cuhklinlab/RA3 documentation built on March 18, 2021, 4:38 p.m.