inst/README.md

In currocam/FascinRSCA: R and Python code for SCA with fascin protein

This folder contains files with information obtained from external sources and processed in the scripts / notebooks, as well as intermediate files.

| - external
  |  | - structures_files
  |  |  | - O14926-1
  |  |  | - fascin1
  |  | - temp
  |  |  | - clustalw
  |  |  | - expresso_ann
  |  |  |  | - all_fascin2_clust
  |  |  |  | - peces
  |  |  |  | - all_fascin_ann
  |  |  |  | - all-fsacin2-ann
  |  |  |  | - all_fascin_clust
  |  |  | - dali
  |  | - accurate_ann
  | - processed
  |  | - fascin_ann_classifier_desc_prepro
  |  | - structures_files
  |  |  | - AlphaFold2
  |  |  |  | - O14926-2
  |  |  | - RoseTTAFold
  |  |  |  | - O14926-2
  |  | - freezing_cluster_ann
  |  | - fascin1_hmmer_aln
  |  | - temp
  |  |  | - fasta_aln
  |  |  |  | - fascin1_lump_min
  |  |  |  |  | - class
  |  |  |  |  | - phylum
  |  |  |  | - cluster1_lump_min
  |  |  |  |  | - class
  |  |  |  |  | - phylum
  |  |  |  | - fascin2_lump_min
  |  |  |  |  | - class
  |  |  |  |  | - phylum
  |  |  |  | - cluster2_lump_min
  |  |  |  |  | - class
  |  |  |  |  | - phylum
  |  |  | - fasta_files
  |  |  |  | - cluster2
  |  |  |  |  | - class
  |  |  |  |  | - phylum
  |  |  |  |  | - order
  |  |  |  |  | - genus
  |  |  |  |  | - suborder
  |  |  |  |  | - family
  |  |  |  |  | - superkingdom
  |  |  |  |  | - kingdom
  |  |  |  | - cluster1
  |  |  |  |  | - class
  |  |  |  |  | - phylum
  |  |  |  |  | - order
  |  |  |  |  | - genus
  |  |  |  |  | - suborder
  |  |  |  |  | - family
  |  |  |  |  | - superkingdom
  |  |  |  |  | - kingdom
  |  |  |  | - fascin2
  |  |  |  |  | - class
  |  |  |  |  | - phylum
  |  |  |  |  | - order
  |  |  |  |  | - genus
  |  |  |  |  | - suborder
  |  |  |  |  | - family
  |  |  |  |  | - superkingdom
  |  |  |  |  | - kingdom
  |  |  |  | - fascin1
  |  |  |  |  | - class
  |  |  |  |  | - phylum
  |  |  |  |  | - order
  |  |  |  |  | - genus
  |  |  |  |  | - suborder
  |  |  |  |  | - family
  |  |  |  |  | - superkingdom
  |  |  |  |  | - kingdom
  | - interim
  |  | - fascin1_trim_t_coffee
  |  | - gpad_fascin_rel_shared_GoAnn
  |  | - fascin1_trim_hmm
  |  |  | - align
  |  |  | - search
  |  | - fascin_ann_classifier_desc
  |  | - EMBOSS_classifier_desc
  |  | - negative_control

currocam/FascinRSCA documentation built on March 21, 2022, 6:29 a.m.